Journal of Plant Bioinformatics and Biotechnology

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Volume 2 (2022)

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Volume 1 (2021)

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h-index (Google Scholar)	5
i10-index(Google Scholar)	2
Google Scholar Citation	58
Web of Science Citation	27
Scopus Citation	4
Issue per year	4
No. of volumes	2
No. of Issues	3
Published articles	17
Rejected Submissions	10
Acceptance rate	60
Review papers	1
Accepted Submissions	18
No. of contributors	46
No. of submissions	30
Article view	6,573
PDF download	3,180
View Per Article	386.65
PDF Download Per Article	187.06
No. of reviewers	2984
Number of Contributors	46
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Journal of Plant Bioinformatics and Biotechnology

Abbriviation: J. Plant Bioinform. Biotechnol.

DOI: 10.22034/JPBB/Year.Issue.No

Journal of Plant Bioinformatics and Biotechnology (JPBB) was launched by Sami Publishing Company in 2021 with cooperation of Biosafety Society of Iran and Seed Science Society of Iran. This double peer-reviewed and indexed journal aim to provide a platform for researchers around the world to share their latest findings in all fields of Plant Bioinformatics and Biotechnology. Experimental, theoretical and applied original research studies in all fields of chemistry are welcomed for submission. The journal is Open Access with article processing charges and all articles published in this journal are freely available for readers online at http://jpbb.samipubco.com without a subscription and authors retain the copyright of their work.

JPBB is published Semiannual (online and in print= 2 Issues per year).

All submitted manuscripts are checked for similarity through a trustworthy software named iThenticate to be assured about its originality and then rigorously peer-reviewed by the international reviewers.

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Current Issue
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Mini Review Article

Plant disease management approaches for organic crop production in Indian scenario: A critical review

Kishor Chand Kumhar; Bijender Singh Beniwal; Ram Dhan Jat; Bharat Patel; Hans Raj; Narender Yadav; Mukesh Kumar; Suresh Kumar; Anil Kumar

Volume 2, Issue 1 , April 2022, Pages 1-10

https://doi.org/10.22034/jpbb.2022.327017.1018

Abstract

In recent times, the agricultural scenario has been undergoing a drastic change in converting from inorganic to an organic system. It has been gaining fabulous popularity amongst the ... Read More

Original Article

Improving yield, mucilage and seed oil of the Balangu (Lallemantia spp) landraces in dryland conditions

Raham Mohtashami; Houshang Naraki; Yousef Askari

Volume 2, Issue 1 , April 2022, Pages 11-17

https://doi.org/10.22034/jpbb.2022.339316.1022

Abstract

Background: Water stress is one of the most important abiotic stresses, which limiting plant growth and yield in dryland conditions. Balangu (Lallemantia spp), is a plant of Lamiaceae ... Read More Background: Water stress is one of the most important abiotic stresses, which limiting plant growth and yield in dryland conditions. Balangu (Lallemantia spp), is a plant of Lamiaceae family and has several nutritional and medicinal uses. This experiment was carried out in the farm of Yasouj Agricultural and Natural Resources Research Center in 2017-2017. This study was conducted in a randomized complete block design with five medicinal plant landraces of Balangu (Kerman, Isfahan, Kurdistan, Mashhad and Malekan) in four replications in dryland conditions. Due to water limitation in arid and semi-arid regions and the importance of the Balangu medicinal plant, the objectives of this experiment was to improvement the yield, percentage and yield of mucilage and seed oil of Balangu landraces in dryland conditions. Methods: The measured traits in this experiment included grain yield, mucilage and oil. The percentage of mucilage was measured by, heat one gram of dry grain with 10 ml of 0.1 N hydrochloric acid until discoloration occurs in the grain shell, then add 60 ml of 96% ethyl alcohol to the resulting mucilage solution and refrigerate for five hours. The resulting precipitate was placed in an oven for 12 hours after filtration at 50 C °. After the amount of mucilage was recorded as a percentage. The seed oil percentage was measured by Soxhlet method. First, the desired seeds were milled. Then passed through a 20 mesh sieve and about 5 to 10 grams of powdered seeds were wrapped in filter paper. Then, a sample of filter paper with seed powder was placed in the cartridge of Soxhlet extractor machine.Results: The results showed that in dryland conditions, grain yield, mucilage and oil of Balangu landraces were significant at 5% probability level. The highest grain yield was obtained from Kurdistan and Mashhad landraces with average yields of 529 and 515 kg ha-1, respectively. They had higher mucilage and seed oil yield than other landraces tested.Conclusion: Overall, the results of this study concluded that the landraces of Kurdistan and Mashhad are recommended for cultivation in dryland conditions due to high yield, mucilage and grain oil.

Review Article

Introduction to NGS platforms and their role in plant genetic modification

Maryam Shariat; Saeid Neysi

Volume 2, Issue 1 , April 2022, Pages 18-32

https://doi.org/10.22034/JPBB.2022.322974.1017

Abstract

DNA sequencing is one of the most important techniques in the field of molecular biology, according to which the order of nucleotides can be determined in a piece of DNA. There are ... Read More

Original Article

Proteome-Wide Computational Analysis for More G Protein-Coupled Receptors-Like Proteins in Selected Plants

Gyan Prakash Srivastava; Neelam Yadav; Dinesh Kumar Yadav

Volume 2, Issue 1 , April 2022, Pages 33-61

https://doi.org/10.22034/jpbb.2022.338367.1023

Abstract

G protein-coupled receptor (GPCR), superfamily of heptahelical transmembrane receptor proteins, controls a plethora of signals through either interaction with G protein heterotrimer ... Read More

Original Article

Joint Action of Bacillus thuringiensis kurstaki and Nuclear Polyhedrosis Virus Against Spodoptera littoralis (Lepidoptera, Noctuidae)

Seham Mansour Ismail

Volume 2, Issue 1 , April 2022, Pages 62-68

https://doi.org/10.22034/jpbb.2022.346349.1025

Abstract

AbsractIntroduction: Synthetic chemical insecticides are becoming ineffective against Spodoptera littoralis (Boisaduval, 1833) because of resistance. Microbial insecticides, also known ... Read More

Original Article

Omicron B.1.1.529 Tyrosine Phosphatase Receptor Transition Among SARS-CoV-2 Heredities: A Validation Of Homology Modelling And Phylogenetic Analysis

Venu Paritala; Harsha Thummala; Mohit T.N.S

Volume 2, Issue 1 , April 2022, Pages 69-80

https://doi.org/10.22034/jpbb.2022.348269.1026

Abstract

Introduction: Sars-cov-2 heredities have spread around the world and have been declared a worldwide pandemic. Thus, additional research is required. In this research, we used bioinformatics ... Read More

Effects of Culture Medium and Concentration of Different Growth Regulators on Organogenesis Damask rose (Rosa damascena Mill)

Hamideh Khajeh; Farzaneh Fazeli; Ayoub Mazarie

Volume 1, Issue 1 , June 2021, , Pages 14-27

https://doi.org/10.22034/jpbb.2021.276335.1004

Abstract

In vitro cultivation method is a proper way to fast propagation of commercial rose cultivars with high uniformity, and even today, it is regarded as a desirable solution for correction ... Read More

Effects of culture medium and plant hormones in organogenesis in olive (CV. Kroneiki)

Bahman Fazeli-Nasab; Ahmad Farid Rahmani; Hamideh Khajeh

Volume 1, Issue 1 , June 2021, , Pages 1-13

https://doi.org/10.22034/jpbb.2021.268638.1000

Abstract

A long time has passed since the first experience of In Vitro propagation of olive, but the presence of very strong end dominance in the neoplasm stage, which cannot be controlled by ... Read More A long time has passed since the first experience of In Vitro propagation of olive, but the presence of very strong end dominance in the neoplasm stage, which cannot be controlled by various cytokinin treatments, has limited the possibility of propagation in vitro. Therefore, the aim of the present study was to evaluate the micro-propagation feasibility inside olive glasses of olive cultivar Kroneiki. For branching and rooting of lateral buds, the experiment was carried out as a factorial experiment based on completely randomized design with three replications. Branching factors include five types of culture media (MS, MS1/2, MSM, MSM1/2 and OM), two types of hormones (BAP and Zeatin), and three types of hormone concentrations (control, 0.5 and 1 mg/L) and there were three types of time periods. Rooting factors include five types of culture media (MS, MS1/2, MSM, MSM1/2 and OM), two types of hormone combinations (IBA and NAA), four types of hormone concentrations (control, combination of 0.2 with 0.5, combination 0.5 with 1 and a combination of 0.75 with 1.5 mg/L) and three types of time intervals. Analysis of variance was performed by Statistix10 software and the comparison of mean traits was performed using the least significant difference test. The effects of culture medium, different hormones and also different concentrations of hormones used in the period, on the number of green leaves, number of yellow leaves, fresh weight and dry weight of seedlings as well as rooting were examined , which were found different (P <0.01). The highest length of branch (1.8 cm) was obtained in MSM culture medium with BAP hormone in the third week. The highest fresh weight (0.06 g), the highest dry weight (0.003 g) and the highest amount of green leaves (55.39%) were obtained from the treatment of MSM medium with 1 ppm of BAP hormone. The highest rooting rate (95.17%) was obtained from the treatment of MS1/2 medium with 1.5 ppm of BAP hormone and 0.75 ppm of NAA hormone in the third week. The most effective culture medium and hormone on branching was MSM culture medium with 1 ppm BAP hormone and on rooting, MS1 culture medium with 1.5 ppm BAP hormone and 0.75 ppm NAA hormone.

In Silico Evaluation of Expansin-Gene Function in Softening and Fruit Ripening

Ali Salehi Sardoei; Hojjat Rezaei; Hadi Ghasemi

Volume 1, Issue 2 , December 2021, , Pages 73-83

https://doi.org/10.22034/jpbb.2021.302209.1014

Abstract

The up-to-date achievements in expansin (EXP) researches were evaluated. Plus making the strength that the plants need, cell walls define cell function, cell shape, and cell size. Cell ... Read More

A Review of RNA Motifs, Identification Algorithms and their Function on Plants

Davoud Naderi; Raheba Jami; Fazal UR Rehman

Volume 1, Issue 1 , June 2021, , Pages 28-40

https://doi.org/10.22034/jpbb.2021.271442.1001

Abstract

Recent Genomic research has significantly developed human knowledge on structural non-coding RNAs (ncRNAs) which folds into characteristic secondary structures and performs specific-structure ... Read More Recent Genomic research has significantly developed human knowledge on structural non-coding RNAs (ncRNAs) which folds into characteristic secondary structures and performs specific-structure dependent biological functions. Hence, RNA secondary structure prediction is among the most commonly evaluated issues in computational RNA biology. The aim of the present study is to introduce the key role of RNA motifs in biological processes. Such motifs are specifically effective in regulating gene expression, maintaining structure and strength of RNA molecule, splicing the early mRNA, and providing the most appropriate recognition site for protein binding. Doing research and analyzing RNA motifs requires using several methods and algorithms which can provide the structure and properties of these building blocks in organisms. Generally, the most successful computational methods used in organizing RNA include the QRNA, RNAz, and CMfinder algorithms, which correlate nucleotides and other features of RNA structure formation and maintenance. In plants, RNA Recognition Motif (RRM), an 80- amino acid protected motif, is one of the most abundant protein motifs in eukaryotes. This motif has various important roles like participating in growth processes and responding to stresses in plants, and accelerating different metabolic processes. In addition, further analysis of ORRM family members represented presence of ORRM2, ORRM3 and ORRM4 acting as RNA editing factors in mitochondria as well as ORRM6 which is a chloroplast RNA editing factor. Among the construction motifs, the Pseudoknot motif which contributes to several biological activities such as altering expression of pathogenic genes in some viruses and formation of telomerase and self-truncating introns is of great significance, since these are important breeding factors in biotechnology. Based on the results of the study, it can be proposed that further studies on bioinformatics analysis of plant motifs are required to be implemented to open new windows on controlling pathogens in plants.

In vitro Production of PPV-free Sweet cherry (Prunus avium cv. Siahe-Mashhad) by Meristem culture and micro-grafting

Mohammad Esmaeil Naddaf; Gholamreza Rabiei; Ebrahim Ganji Moghadam; Abdorahman Mohammadkhani

Volume 1, Issue 1 , June 2021, , Pages 51-59

https://doi.org/10.22034/jpbb.2021.282382.1005

Abstract

Plum Pox Virus (PPV) is one of the most common viral agents in sweet cherry. This study was carried out to investigate the effect of culturing method and explant type for production ... Read More

Journal of Plant Bioinformatics and Biotechnology

Publisher:
Sami Publishing Company

Editor-in-Chief:
Prof. Dr. Danial Kahrizi

Honorary Editor-in-Chief:
Prof. Dr. Behzad Ghareyazie

International Editorial Board:
Prof. Dr. M. R. Mozafari

Assistant Editor:
Dr. Sabereh Ahmadzadeh

Director-in-Charge:
Dr. Sami Sajjadifar

Frequency: Semiannual

Print ISSN: 2783-3143

Online ISSN: 2783-2082

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