Journal of Plant Bioinformatics and Biotechnology

Original Article

Single nucleotide polymorphism analysis and 3D protein models predict a gap between Bean golden yellow mosaic virus isolates found in Cuba and those of the continent.

Yoslaine Ruiz; Natacha Carlos; Alexis Musacchio; Yadira Sanchez; Danay Callard; Rosabel Perez; Merardo Pujol; Alejandro Fuentes

Volume 2, Issue 2 , October 2022, Pages 1-14

https://doi.org/10.22034/jpbb.2022.355821.1028

Abstract

Bean golden yellow mosaic virus (BGYMV) is considered the main drawback for bean production in the Caribbean basin and South Florida, where it is widely distributed. In Cuba, BGYMV ... Read More

Original Article

Optimization of an Efficient DNA Isolation Method from Protein-Rich Seeds of Chickpea (Cicer arietinum L.) for Seeds Certification Program

Akram Ghaffari; Mohammad Reza Jazayeri; Bita Oskouei

Volume 2, Issue 2 , October 2022, Pages 15-24

https://doi.org/10.22034/jpbb.2022.355919.1027

Abstract

Introduction: Reaching an appropriate DNA isolation protocol is a great challenge in chickpea seeds due to its richness in protein and carbohydrates. In this research, a chickpea seed ... Read More

Original Article

Suppressive Effects of Gossypol on the Spodoptera littoralis (Lepidoptera: Noctuidae) Reproduction and Enzymatic Properties

Seham Ismail

Volume 2, Issue 2 , October 2022, Pages 25-33

https://doi.org/10.22034/jpbb.2022.363668.1030

Abstract

Introduction: Fecundity (egg laying) and fertility (egg hatching) are important components of insect reproduction. Gossypol has been reported to be an active anti-reproductive inhibitor ... Read More

Review Article

Comparative gut Microbiome Evaluation of two Distinct Organisms: A Critical Review

Venu Paritala

Volume 2, Issue 2 , October 2022, Pages 34-43

https://doi.org/10.22034/jpbb.2022.346237.1024

Abstract

Background: The investigation of microbial community composition has been significantly influenced by technological innovations in the next-generation sequencing-based techniques. These ... Read More

Effects of Culture Medium and Concentration of Different Growth Regulators on Organogenesis Damask rose (Rosa damascena Mill)

Hamideh Khajeh; Farzaneh Fazeli; Ayoub Mazarie

Volume 1, Issue 1 , June 2021, , Pages 14-27

https://doi.org/10.22034/jpbb.2021.276335.1004

Abstract

In vitro cultivation method is a proper way to fast propagation of commercial rose cultivars with high uniformity, and even today, it is regarded as a desirable solution for correction ... Read More

In Silico Evaluation of Expansin-Gene Function in Softening and Fruit Ripening

Ali Salehi Sardoei; Hojjat Rezaei; Hadi Ghasemi

Volume 1, Issue 2 , December 2021, , Pages 73-83

https://doi.org/10.22034/jpbb.2021.302209.1014

Abstract

The up-to-date achievements in expansin (EXP) researches were evaluated. Plus making the strength that the plants need, cell walls define cell function, cell shape, and cell size. Cell ... Read More

Effects of culture medium and plant hormones in organogenesis in olive (CV. Kroneiki)

Bahman Fazeli-Nasab; Ahmad Farid Rahmani; Hamideh Khajeh

Volume 1, Issue 1 , June 2021, , Pages 1-13

https://doi.org/10.22034/jpbb.2021.268638.1000

Abstract

A long time has passed since the first experience of In Vitro propagation of olive, but the presence of very strong end dominance in the neoplasm stage, which cannot be controlled by ... Read More A long time has passed since the first experience of In Vitro propagation of olive, but the presence of very strong end dominance in the neoplasm stage, which cannot be controlled by various cytokinin treatments, has limited the possibility of propagation in vitro. Therefore, the aim of the present study was to evaluate the micro-propagation feasibility inside olive glasses of olive cultivar Kroneiki. For branching and rooting of lateral buds, the experiment was carried out as a factorial experiment based on completely randomized design with three replications. Branching factors include five types of culture media (MS, MS1/2, MSM, MSM1/2 and OM), two types of hormones (BAP and Zeatin), and three types of hormone concentrations (control, 0.5 and 1 mg/L) and there were three types of time periods. Rooting factors include five types of culture media (MS, MS1/2, MSM, MSM1/2 and OM), two types of hormone combinations (IBA and NAA), four types of hormone concentrations (control, combination of 0.2 with 0.5, combination 0.5 with 1 and a combination of 0.75 with 1.5 mg/L) and three types of time intervals. Analysis of variance was performed by Statistix10 software and the comparison of mean traits was performed using the least significant difference test. The effects of culture medium, different hormones and also different concentrations of hormones used in the period, on the number of green leaves, number of yellow leaves, fresh weight and dry weight of seedlings as well as rooting were examined , which were found different (P <0.01). The highest length of branch (1.8 cm) was obtained in MSM culture medium with BAP hormone in the third week. The highest fresh weight (0.06 g), the highest dry weight (0.003 g) and the highest amount of green leaves (55.39%) were obtained from the treatment of MSM medium with 1 ppm of BAP hormone. The highest rooting rate (95.17%) was obtained from the treatment of MS1/2 medium with 1.5 ppm of BAP hormone and 0.75 ppm of NAA hormone in the third week. The most effective culture medium and hormone on branching was MSM culture medium with 1 ppm BAP hormone and on rooting, MS1 culture medium with 1.5 ppm BAP hormone and 0.75 ppm NAA hormone.

A Review of RNA Motifs, Identification Algorithms and their Function on Plants

Davoud Naderi; Raheba Jami; Fazal UR Rehman

Volume 1, Issue 1 , June 2021, , Pages 28-40

https://doi.org/10.22034/jpbb.2021.271442.1001

Abstract

Recent Genomic research has significantly developed human knowledge on structural non-coding RNAs (ncRNAs) which folds into characteristic secondary structures and performs specific-structure ... Read More Recent Genomic research has significantly developed human knowledge on structural non-coding RNAs (ncRNAs) which folds into characteristic secondary structures and performs specific-structure dependent biological functions. Hence, RNA secondary structure prediction is among the most commonly evaluated issues in computational RNA biology. The aim of the present study is to introduce the key role of RNA motifs in biological processes. Such motifs are specifically effective in regulating gene expression, maintaining structure and strength of RNA molecule, splicing the early mRNA, and providing the most appropriate recognition site for protein binding. Doing research and analyzing RNA motifs requires using several methods and algorithms which can provide the structure and properties of these building blocks in organisms. Generally, the most successful computational methods used in organizing RNA include the QRNA, RNAz, and CMfinder algorithms, which correlate nucleotides and other features of RNA structure formation and maintenance. In plants, RNA Recognition Motif (RRM), an 80- amino acid protected motif, is one of the most abundant protein motifs in eukaryotes. This motif has various important roles like participating in growth processes and responding to stresses in plants, and accelerating different metabolic processes. In addition, further analysis of ORRM family members represented presence of ORRM2, ORRM3 and ORRM4 acting as RNA editing factors in mitochondria as well as ORRM6 which is a chloroplast RNA editing factor. Among the construction motifs, the Pseudoknot motif which contributes to several biological activities such as altering expression of pathogenic genes in some viruses and formation of telomerase and self-truncating introns is of great significance, since these are important breeding factors in biotechnology. Based on the results of the study, it can be proposed that further studies on bioinformatics analysis of plant motifs are required to be implemented to open new windows on controlling pathogens in plants.

In vitro Production of PPV-free Sweet cherry (Prunus avium cv. Siahe-Mashhad) by Meristem culture and micro-grafting

Mohammad Esmaeil Naddaf; Gholamreza Rabiei; Ebrahim Ganji Moghadam; Abdorahman Mohammadkhani

Volume 1, Issue 1 , June 2021, , Pages 51-59

https://doi.org/10.22034/jpbb.2021.282382.1005

Abstract

Plum Pox Virus (PPV) is one of the most common viral agents in sweet cherry. This study was carried out to investigate the effect of culturing method and explant type for production ... Read More

Facts & Figures
h-index (Google Scholar)	6
i10-index(Google Scholar)	3
Google Scholar Citation	67
Web of Science Citation	27
Scopus Citation	4
Issue per year	4
No. of volumes	2
No. of Issues	4
Published articles	21
Rejected Submissions	10
Acceptance rate	66
Review papers	1
Accepted Submissions	21
No. of contributors	57
No. of submissions	32
Article view	7,724
PDF download	3,684
View Per Article	367.81
PDF Download Per Article	175.43
No. of reviewers	2990
Number of Contributors	57
No. of databases	7

Journal of Plant Bioinformatics and Biotechnology

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Current Issue

Volume 2 (2022)

Volume 1 (2021)

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Single nucleotide polymorphism analysis and 3D protein models predict a gap between Bean golden yellow mosaic virus isolates found in Cuba and those of the continent.

Abstract

Optimization of an Efficient DNA Isolation Method from Protein-Rich Seeds of Chickpea (Cicer arietinum L.) for Seeds Certification Program

Abstract

Suppressive Effects of Gossypol on the Spodoptera littoralis (Lepidoptera: Noctuidae) Reproduction and Enzymatic Properties

Abstract

Comparative gut Microbiome Evaluation of two Distinct Organisms: A Critical Review

Abstract

Effects of Culture Medium and Concentration of Different Growth Regulators on Organogenesis Damask rose (Rosa damascena Mill)

Abstract

In Silico Evaluation of Expansin-Gene Function in Softening and Fruit Ripening

Abstract

Effects of culture medium and plant hormones in organogenesis in olive (CV. Kroneiki)

Abstract

A Review of RNA Motifs, Identification Algorithms and their Function on Plants

Abstract

In vitro Production of PPV-free Sweet cherry (Prunus avium cv. Siahe-Mashhad) by Meristem culture and micro-grafting

Abstract

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